Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops
The revolution in digital phenotyping combined with the new layers of omics and envirotyping tools offers great promise to improve selection and accelerate genetic gains for crop improvement. This chapter examines the latest methods involving digital phenotyping tools to predict complex traits in ce...
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Burleigh Dodds Science Publishing
2023
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| Truy cập trực tuyến: | ONIX_20230227_9781801463126_36 |
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| _version_ | 1863742617277169664 |
|---|---|
| author | Virlet, Nicolas Lyra, Danilo H. Hawkesford, Malcolm J. |
| author_browse | Hawkesford, Malcolm J. Lyra, Danilo H. Virlet, Nicolas |
| author_facet | Virlet, Nicolas Lyra, Danilo H. Hawkesford, Malcolm J. |
| author_sort | Virlet, Nicolas |
| collection | Directory of Open Access Books |
| description | The revolution in digital phenotyping combined with the new layers of omics and envirotyping tools offers great promise to improve selection and accelerate genetic gains for crop improvement. This chapter examines the latest methods involving digital phenotyping tools to predict complex traits in cereals crops. The chapter has two parts. In the first part, entitled “Digital phenotyping as a tool to support breeding programs”, the secondary phenotypes measured by high-throughput plant phenotyping that are potentially useful for breeding are reviewed. In the second part, “Implementing complex G2P models in breeding programs”, the integration of data from digital phenotyping into genotype to phenotype (G2P) models to improve the prediction of complex traits using genomic information is discussed. The current status of statistical models to incorporate secondary traits in univariate and multivariate models, as well as how to better handle longitudinal (for example light interception, biomass accumulation, canopy height) traits, is reviewed. |
| format | Online |
| id | doab-20.500.12854ir-97607 |
| institution | Directory of Open Access Books |
| language | eng |
| publishDate | 2023 |
| publishDateRange | 2023 |
| publishDateSort | 2023 |
| publisher | Burleigh Dodds Science Publishing |
| publisherStr | Burleigh Dodds Science Publishing |
| record_format | ojs |
| spelling | doab-20.500.12854ir-976072024-04-14T10:28:51Z Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops Virlet, Nicolas Lyra, Danilo H. Hawkesford, Malcolm J. Phenomics field phenotyping G2P modelling envirotyping breeding thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences The revolution in digital phenotyping combined with the new layers of omics and envirotyping tools offers great promise to improve selection and accelerate genetic gains for crop improvement. This chapter examines the latest methods involving digital phenotyping tools to predict complex traits in cereals crops. The chapter has two parts. In the first part, entitled “Digital phenotyping as a tool to support breeding programs”, the secondary phenotypes measured by high-throughput plant phenotyping that are potentially useful for breeding are reviewed. In the second part, “Implementing complex G2P models in breeding programs”, the integration of data from digital phenotyping into genotype to phenotype (G2P) models to improve the prediction of complex traits using genomic information is discussed. The current status of statistical models to incorporate secondary traits in univariate and multivariate models, as well as how to better handle longitudinal (for example light interception, biomass accumulation, canopy height) traits, is reviewed. 2023-03-03T04:08:59Z 2023-03-03T04:08:59Z 2023-02-27T12:21:45Z 2022 chapter ONIX_20230227_9781801463126_36 https://library.oapen.org/handle/20.500.12657/61524 9781801463126 https://directory.doabooks.org/handle/20.500.12854/97607 eng Burleigh Dodds Series in Agricultural Science open access image/jpeg image/jpeg Attribution 4.0 International Attribution 4.0 International https://library.oapen.org/bitstream/20.500.12657/61524/1/9781801463126_web.pdf https://library.oapen.org/bitstream/20.500.12657/61524/1/9781801463126_web.pdf Burleigh Dodds Science Publishing Burleigh Dodds Science Publishing 10.19103/AS.2022.0102.12 10.19103/AS.2022.0102.12 7f047d73-123f-4ae5-87fd-34c46926a6f9 Rothamsted Research 7c1b4f65-1bfe-4cea-9a5b-326d0b422637 9781801463126 Burleigh Dodds Science Publishing 40 Cambridge [...] open access |
| spellingShingle | Phenomics field phenotyping G2P modelling envirotyping breeding thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences Virlet, Nicolas Lyra, Danilo H. Hawkesford, Malcolm J. Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops |
| title | Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops |
| title_full | Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops |
| title_fullStr | Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops |
| title_full_unstemmed | Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops |
| title_short | Digital phenotyping and genotype-to-phenotype (G2P) models to predict complex traits in cereal crops |
| title_sort | digital phenotyping and genotype to phenotype g2p models to predict complex traits in cereal crops |
| topic | Phenomics field phenotyping G2P modelling envirotyping breeding thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences |
| topic_facet | Phenomics field phenotyping G2P modelling envirotyping breeding thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVK Agronomy and crop production thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes::TV Agriculture and farming::TVF Sustainable agriculture thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences |
| url | ONIX_20230227_9781801463126_36 |
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